Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A10G197400.3.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3898
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:1628 original size:81 final size:81

Alignment explanation


    Indices: 1520--1682  Score: 281
    Period size: 81  Copynumber: 2.0  Consensus size: 81

       1510 GAAGGTGAAA

                         *                                             *     
       1520 ATGACAGAAGCAATGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACAAAGAG

                            
       1585 GATCTAAAGTCTGAGG
         66 GATCTAAAGTCTGAGG

                                                             *  *            
       1601 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCTGATGGTGACAAAGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACAAAGAG

                 *          
       1666 GATCTGAAGTCTGAGG
         66 GATCTAAAGTCTGAGG

             
       1682 A
          1 A

       1683 AGATGGCATG


Statistics
Matches: 77,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  81   77  1.00

ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23


Consensus pattern (81 bp):   
ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACAAAGAG
GATCTAAAGTCTGAGG
Done.