Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gohir.A11G032500.2.v1.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4606
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Found at i:843 original size:45 final size:44
Alignment explanation
Indices: 733--858 Score: 171
Period size: 45 Copynumber: 2.8 Consensus size: 44
723 CTCCGTCTTT
* * *
733 ACCATCCTCTTCAACAGCTAGTGTCCCACTTCCTCCTCCACCTTC
1 ACCACCCTCTTCAACA-CTACTGCCCCACTTCCTCCTCCACCTTC
* *
778 ACCACCCTCTTCAGCAACTACTGCCCCACATCCTCCTCCACCTTC
1 ACCACCCTCTTCAAC-ACTACTGCCCCACTTCCTCCTCCACCTTC
*
823 ACCACCCTCTTCAACGACTACTACCCCACTTCCTCC
1 ACCACCCTCTTCAAC-ACTACTGCCCCACTTCCTCC
859 AACCTCACCA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 70 0.99
46 1 0.01
ACGTcount: A:0.20, C:0.51, G:0.05, T:0.25
Consensus pattern (44 bp):
ACCACCCTCTTCAACACTACTGCCCCACTTCCTCCTCCACCTTC
Found at i:870 original size:42 final size:44
Alignment explanation
Indices: 733--884 Score: 148
Period size: 45 Copynumber: 3.5 Consensus size: 44
723 CTCCGTCTTT
* * * ** *
733 ACCATCCTCTTCAACAGCTAGTGTCCCACTTCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
* *
778 ACCACCCTCTTCAGCAACTACTGCCCCACATCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
*
823 ACCACCCTCTTCAACGACTACTACCCCAC-T-TCCTCCAACC-TC
1 ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCC-ACCTTC
* * *
865 ACCACCTTTTTCAACTACTA
1 ACCACCCTCTTCAACAACTA
885 TTGCCTTGTC
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
42 25 0.27
43 3 0.03
44 1 0.01
45 65 0.69
ACGTcount: A:0.22, C:0.49, G:0.04, T:0.26
Consensus pattern (44 bp):
ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCCACCTTC
Found at i:941 original size:42 final size:42
Alignment explanation
Indices: 895--1039 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 42
885 TTGCCTTGTC
895 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
* **** * * * **
937 TCCTCCATTTTCACCACCCTTTTCAA---CTACTATTGCCTTGT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACT-CC-ACT
978 CTCCTCCATC-TCTACCACCCCCACCAATGTGTAGTACTCCACT
1 -TCCTCCATCTTC-ACCACCCCCACCAATGTGTAGTACTCCACT
*
1021 TCCTCCACCTTCACCACCC
1 TCCTCCATCTTCACCACCC
1040 TCTTTGACTA
Statistics
Matches: 74, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
39 5 0.07
40 2 0.03
41 3 0.04
42 54 0.73
43 3 0.04
44 2 0.03
45 5 0.07
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (42 bp):
TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
Found at i:1055 original size:84 final size:84
Alignment explanation
Indices: 848--1040 Score: 327
Period size: 84 Copynumber: 2.3 Consensus size: 84
838 GACTACTACC
*
848 CCACTTCCTCCAACC-TCACCACCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
1 CCACTTCCTCC-ACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
912 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
**
932 CCACTTCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATC-TCTACCAC
1 CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTC-ACCAC
996 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
1016 CCACTTCCTCCACCTTCACCACCCT
1 CCACTTCCTCCACCTTCACCACCCT
1041 CTTTGACTAA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
83 3 0.03
84 99 0.97
ACGTcount: A:0.19, C:0.45, G:0.05, T:0.31
Consensus pattern (84 bp):
CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCACC
CCCACCAATGTGTAGTACT
Found at i:1065 original size:84 final size:84
Alignment explanation
Indices: 766--1067 Score: 290
Period size: 84 Copynumber: 3.6 Consensus size: 84
756 TCCCACTTCC
* * * * *
766 TCCTCCACCTTCACCACCCTCTTCAGC-AACTACTGCCCCACATCCTCCTCCACCTTCACCACCC
1 TCCTCCACCTTCACCACCCTTTTCAACTAA-TATTG--CCTCAT-CTCCTCCATCTTCACCACCC
* ** * ** * *
830 TCTTCAACGACTACTACCCCACT
62 CCACCAATGTGTAGTACTCCACT
* * **
853 TCCTCCAACC-TCACCACCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCACCCCCA
1 TCCTCC-ACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCATCTTCACCACCCCCA
917 CCAATGTGTAGTACTCCACT
65 CCAATGTGTAGTACTCCACT
** * **
937 TCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATC-TCTACCACCCCCA
1 TCCTCCACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCATCTTC-ACCACCCCCA
1001 CCAATGTGTAGTACTCCACT
65 CCAATGTGTAGTACTCCACT
*
1021 TCCTCCACCTTCACCACCCTCTTT-GACTAATATTGTCC-CATCTCCTC
1 TCCTCCACCTTCACCACCCT-TTTCAACTAATATTG-CCTCATCTCCTC
1068 TAGCTCCACA
Statistics
Matches: 183, Mismatches: 26, Indels: 15
0.82 0.12 0.07
Matches are distributed among these distances:
83 3 0.02
84 144 0.79
85 8 0.04
87 24 0.13
88 4 0.02
ACGTcount: A:0.20, C:0.46, G:0.05, T:0.30
Consensus pattern (84 bp):
TCCTCCACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCATCTTCACCACCCCCAC
CAATGTGTAGTACTCCACT
Found at i:1090 original size:84 final size:84
Alignment explanation
Indices: 848--1123 Score: 272
Period size: 84 Copynumber: 3.3 Consensus size: 84
838 GACTACTACC
* * ** * * *
848 CCACTTCCTCCAACC-TCACCACCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
1 CCACTTCCTCC-ACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCAGCTCCACAAC
912 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
** * ** * * *
932 CCACTTCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTCTACCACC
1 CCACTTCCTCCACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCAGCTCCACAACC
997 CCCACCAATGTGTAGTACT
66 CCCACCAATGTGTAGTACT
* *
1016 CCACTTCCTCCACCTTCACCACCCTCTTT-GACTAATATTGTCC-CATCTCCTCTAGCTCCACAA
1 CCACTTCCTCCACCTTCACCACCCT-TTTCAACTAATATTG-CCTCATCTCCTCCAGCTCCACAA
* * * *
1079 CTCCCATCAATGTCTAGTGC-
64 CCCCCACCAATGTGTAGTACT
* * *
1099 CTCACTTCTTCGACCTTCATCACCC
1 C-CACTTCCTCCACCTTCACCACCC
1124 GCTTCGGTTA
Statistics
Matches: 166, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
83 2 0.01
84 159 0.96
85 5 0.03
ACGTcount: A:0.20, C:0.43, G:0.06, T:0.32
Consensus pattern (84 bp):
CCACTTCCTCCACCTTCACCACCCTTTTCAACTAATATTGCCTCATCTCCTCCAGCTCCACAACC
CCCACCAATGTGTAGTACT
Found at i:1405 original size:216 final size:207
Alignment explanation
Indices: 1205--1914 Score: 698
Period size: 198 Copynumber: 3.4 Consensus size: 207
1195 CTCGTTTCCT
* * *
1205 CCTCCATCTTCACCACCCTCCTTGATGACTAGTGCCCCACCTCCTCCATCTCCACTACCCCCATC
1 CCTCC-TCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* * * * *
1270 AATATCTAGCACCCCACCTCCTCCCCCATCGGTATCTACTGCTCCACTTCCTCTTTCACCTTCAC
65 AATATCTAGCACCCCACCTCCTCCCTCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCAC
* *
1335 AAACCACTTTGATGACTAGTGGCCC-ACCTCCTTCACCTTCACTACCATCTTCACCTCCCACATT
130 AAACCACTTTGATGACTAGT-GCCCTACCTCCTTCACCTT--CTACCATCTCCACCTCCCTCATT
* *
1399 GATGTCTA-CTGCCCCA
192 GATATCTAGC-ACCCCA
* * * * * ***
1415 CTTCCTCCTCCACCTTCACCACCCTCTGCAACGACTAGTGCCCCACCTCTTTTGTCTCCACCACC
1 CCTCCT-CTTCACC--AACC-TCCT-TG--ACGACTAGTGCCCCACCTCCTCCATCTCCACCACC
* * * * * *
1480 CCTATCAATATCTAGCATCCAACCTCTTCCCTCATCGATGTCTACTGCTTTAATTCCT-TGTTCT
59 CCCATCAATATCTAGCACCCCACCTCCTCCCTCATCGATGTCTACTGCTTCAATTCCTCT-TTCA
* * ** *
1544 TCTTCACCAACCACTTTGACAACTAGTGCCCTACCTCC-T--CCATCT-CCA---CCACC-CCCG
123 CCTTCACAAACCACTTTGATGACTAGTGCCCTACCTCCTTCACCTTCTACCATCTCCACCTCCC-
1601 TCA---ATATCTAGCACCCCA
187 TCATTGATATCTAGCACCCCA
* * * *
1619 CCTCCTCCTTCACCAACC-ACTTCGATGACTAGTACCCCACCTCCTTCATCTCCACCACCCCCAT
1 CCTCCT-CTTCACCAACCTCCTT-GACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCAT
* * * *
1683 CAATATCTAGCACCCCACCTTCTCCCTCATCTATGTCTAATGCTTCAATTCCTCCTTCACCTTCA
64 CAATATCTAGCACCCCACCTCCTCCCTCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCA
* * * * **
1748 CCAAA-TACTTTGATGACTAGTGCCCTACCTCCTCCACCTTC-ACCATCTCCACCACCCCCATCA
129 -CAAACCACTTTGATGACTAGTGCCCTACCTCCTTCACCTTCTACCATCTCCACCTCCCTCATTG
1811 ATATCTAGCACCCCA
193 ATATCTAGCACCCCA
* * * *
1826 CCTCCTCTTTCAACAACCACTTTGACGACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATC
1 CCTCCTC-TTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
1891 AATATCTAGCACCCCACCTCCTCC
65 AATATCTAGCACCCCACCTCCTCC
1915 TTCAACAACC
Statistics
Matches: 407, Mismatches: 66, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
198 112 0.28
199 4 0.01
200 3 0.01
201 7 0.02
202 3 0.01
204 30 0.07
205 4 0.01
206 4 0.01
207 97 0.24
208 2 0.00
209 1 0.00
210 13 0.03
211 2 0.00
212 2 0.00
213 6 0.01
214 2 0.00
215 6 0.01
216 109 0.27
ACGTcount: A:0.21, C:0.45, G:0.07, T:0.27
Consensus pattern (207 bp):
CCTCCTCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATCA
ATATCTAGCACCCCACCTCCTCCCTCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCACA
AACCACTTTGATGACTAGTGCCCTACCTCCTTCACCTTCTACCATCTCCACCTCCCTCATTGATA
TCTAGCACCCCA
Found at i:1622 original size:42 final size:42
Alignment explanation
Indices: 1576--1707 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 42
1566 CTAGTGCCCT
*
1576 ACCTCCTCCATCTCCACCACCCCCGTCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
* * * * *
1618 ACCTCCTCC-T-T-CACCAACCACTTCGATGA-CTAGTACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAAT-ATCTAGCACCCC
*
1657 ACCTCCTTCATCTCCACCACCCCCATCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
*
1699 ACCTTCTCC
1 ACCTCCTCC
1708 CTCATCTATG
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
39 29 0.40
40 3 0.04
41 3 0.04
42 37 0.51
ACGTcount: A:0.22, C:0.52, G:0.05, T:0.22
Consensus pattern (42 bp):
ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
Found at i:1656 original size:39 final size:38
Alignment explanation
Indices: 1545--1663 Score: 103
Period size: 39 Copynumber: 3.0 Consensus size: 38
1535 CCTTGTTCTT
* * * *
1545 CTTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTC
1 CTTCACCAACCACTTCGA-TACTAGTACCCCACCTCCTC
* * * * *
1584 CATCTCCACCACCCCCGTCAATATCTAGCACCCCACCTCCTC
1 C-T-T-CACCAACCACTTCGATA-CTAGTACCCCACCTCCTC
1626 CTTCACCAACCACTTCGATGACTAGTACCCCACCTCCT
1 CTTCACCAACCACTTCGAT-ACTAGTACCCCACCTCCT
1664 TCATCTCCAC
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
39 29 0.48
40 3 0.05
41 3 0.05
42 26 0.43
ACGTcount: A:0.23, C:0.48, G:0.07, T:0.23
Consensus pattern (38 bp):
CTTCACCAACCACTTCGATACTAGTACCCCACCTCCTC
Found at i:1680 original size:81 final size:81
Alignment explanation
Indices: 1545--1707 Score: 254
Period size: 81 Copynumber: 2.0 Consensus size: 81
1535 CCTTGTTCTT
* * * *
1545 CTTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATCTCCACCACCCCCGTCAATATCT
1 CTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCT
1610 AGCACCCCACCTCCTC
66 AGCACCCCACCTCCTC
** *
1626 CTTCACCAACCACTTCGATGACTAGTACCCCACCTCCTTCATCTCCACCACCCCCATCAATATCT
1 CTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCT
*
1691 AGCACCCCACCTTCTC
66 AGCACCCCACCTCCTC
1707 C
1 C
1708 CTCATCTATG
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.23, C:0.49, G:0.06, T:0.23
Consensus pattern (81 bp):
CTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCT
AGCACCCCACCTCCTC
Found at i:1827 original size:42 final size:42
Alignment explanation
Indices: 1781--1995 Score: 147
Period size: 42 Copynumber: 5.3 Consensus size: 42
1771 CCTACCTCCT
*
1781 CCACCTTCACCATCTCCACCACCCCCATCAATATCTAGCACC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
* * * * * ** * ** **
1823 CCACCTCCT-C-TTTCAACAACCACTTTGACGA-CTAGTGCC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
1862 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
* * * * ** * **
1904 CCACCTCCTCC-T-TCAACAACCACTTTGACA-A-CTAGTGCC
1 CCACCTTCTCCATCTCCACCACCCCCATCA-ATATCTAGCACC
* *
1943 CCACCTTCTCCATCTCCACCACCCCCATCAACATCTAACACC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
*
1985 CCACCTCCTCC
1 CCACCTTCTCC
1996 CCCATCGATG
Statistics
Matches: 120, Mismatches: 45, Indels: 16
0.66 0.25 0.09
Matches are distributed among these distances:
39 30 0.25
40 26 0.22
41 26 0.22
42 38 0.32
ACGTcount: A:0.24, C:0.50, G:0.04, T:0.21
Consensus pattern (42 bp):
CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACC
Found at i:1865 original size:39 final size:39
Alignment explanation
Indices: 1821--1948 Score: 105
Period size: 39 Copynumber: 3.2 Consensus size: 39
1811 ATATCTAGCA
*
1821 CCCCACCTCCTCTTTCAACAACCACTTTGACGACTAGTG
1 CCCCACCTCCTCTTTCAACAACCACTTTGACAACTAGTG
* * * * * ** * **
1860 CCCCACCTTCTCCATCTCCACCACCCCCATCA-ATATCTAGCA
1 CCCCACCTCCT-C-TTTCAACAACCACTTTGACA-A-CTAGTG
*
1902 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
1 CCCCACCTCCTCTTTCAACAACCACTTTGACAACTAGTG
1941 CCCCACCT
1 CCCCACCT
1949 TCTCCATCTC
Statistics
Matches: 62, Mismatches: 22, Indels: 10
0.66 0.23 0.11
Matches are distributed among these distances:
39 22 0.35
40 12 0.19
41 14 0.23
42 14 0.23
ACGTcount: A:0.23, C:0.48, G:0.06, T:0.23
Consensus pattern (39 bp):
CCCCACCTCCTCTTTCAACAACCACTTTGACAACTAGTG
Found at i:1867 original size:81 final size:81
Alignment explanation
Indices: 1781--1995 Score: 385
Period size: 81 Copynumber: 2.7 Consensus size: 81
1771 CCTACCTCCT
* *
1781 CCACCTTCACCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCTTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
*
1846 TTTGACGACTAGTGCC
66 TTTGACAACTAGTGCC
1862 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1927 TTTGACAACTAGTGCC
66 TTTGACAACTAGTGCC
* *
1943 CCACCTTCTCCATCTCCACCACCCCCATCAACATCTAACACCCCACCTCCTCC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCC
1996 CCCATCGATG
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 129 1.00
ACGTcount: A:0.24, C:0.50, G:0.04, T:0.21
Consensus pattern (81 bp):
CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
TTTGACAACTAGTGCC
Found at i:2447 original size:33 final size:33
Alignment explanation
Indices: 2363--2447 Score: 80
Period size: 33 Copynumber: 2.6 Consensus size: 33
2353 TGGGGTACCG
* * * * *
2363 CCACCTCCACCGCCGCCTTTTGGAGTTGAATCA
1 CCACCGCCACCACCACCTCTTGGAGTTGAACCA
** * *
2396 CCACTTCCAGCACCACCTCTTGGAGTTGGACCA
1 CCACCGCCACCACCACCTCTTGGAGTTGAACCA
*
2429 CCACCGCCACCACTACCTC
1 CCACCGCCACCACCACCTC
2448 CAGGGGGAGG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.45, G:0.15, T:0.20
Consensus pattern (33 bp):
CCACCGCCACCACCACCTCTTGGAGTTGAACCA
Found at i:2581 original size:36 final size:33
Alignment explanation
Indices: 2406--2559 Score: 218
Period size: 33 Copynumber: 4.7 Consensus size: 33
2396 CCACTTCCAG
* ** * * *
2406 CACCACCTCTTGGAGTTGGACCACCACCGCCAC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
* * *
2439 CACTACCTCCAGGGGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
2472 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
*
2505 CACCACCTCCTGGTGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
2538 CACCACCTCCTGGAGGAGGAGC
1 CACCACCTCCTGGAGGAGGAGC
2560 TCCTGGCCCT
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 107 1.00
ACGTcount: A:0.21, C:0.44, G:0.25, T:0.11
Consensus pattern (33 bp):
CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
Done.