Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A11G282800.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29


Found at i:1102 original size:36 final size:35

Alignment explanation


    Indices: 1047--1114  Score: 118
    Period size: 36  Copynumber: 1.9  Consensus size: 35

       1037 GTGTTTAGAT

                                               
       1047 TGGTAAAGTATGTTAAATAATTTGATTTGGTATGG
          1 TGGTAAAGTATGTTAAATAATTTGATTTGGTATGG

                *                            
       1082 TGGTTAAGATATGTTAAATAATTTGATTTGGTA
          1 TGGTAAAG-TATGTTAAATAATTTGATTTGGTA

       1115 ATTGGTAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  35    7  0.23
  36   24  0.77

ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44


Consensus pattern (35 bp):   
TGGTAAAGTATGTTAAATAATTTGATTTGGTATGG
Done.