Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A11G318500.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2098
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:1937 original size:13 final size:13

Alignment explanation


    Indices: 1919--1944  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1909 CTGTTAGCTC

                         
       1919 TTTCCATAAGCAT
          1 TTTCCATAAGCAT

                         
       1932 TTTCCATAAGCAT
          1 TTTCCATAAGCAT

       1945 CGGAAGCTTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38


Consensus pattern (13 bp):   
TTTCCATAAGCAT
Done.