Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A12G122400.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.35


Found at i:1201 original size:12 final size:12

Alignment explanation


    Indices: 1184--1208  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1174 AGGTTTTGTG

                        
       1184 GCTTTGGAGAAT
          1 GCTTTGGAGAAT

                        
       1196 GCTTTGGAGAAT
          1 GCTTTGGAGAAT

             
       1208 G
          1 G

       1209 GATTTGATAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.08, G:0.36, T:0.32


Consensus pattern (12 bp):   
GCTTTGGAGAAT
Done.