Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A13G020000.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1317
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:1270 original size:13 final size:13

Alignment explanation


    Indices: 1252--1278  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1242 ACTCACTTGT

                         
       1252 TAAAAAGGTAAAA
          1 TAAAAAGGTAAAA

                         
       1265 TAAAAAGGTAAAA
          1 TAAAAAGGTAAAA

             
       1278 T
          1 T

       1279 TAGGGATATG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.67, C:0.00, G:0.15, T:0.19


Consensus pattern (13 bp):   
TAAAAAGGTAAAA
Done.