Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D02G060800.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1758
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:63 original size:13 final size:13

Alignment explanation


    Indices: 45--71  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

         35 AAACACACAC

                         
         45 AAAAAAAGAAAAA
          1 AAAAAAAGAAAAA

                         
         58 AAAAAAAGAAAAA
          1 AAAAAAAGAAAAA

             
         71 A
          1 A

         72 GTAGAAGAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (13 bp):   
AAAAAAAGAAAAA
Done.