Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A02G136700.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:1133 original size:16 final size:16

Alignment explanation


    Indices: 1112--1163  Score: 79
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1102 TTTGGTTTGC

                            
       1112 TGTATTGGATTAGAGA
          1 TGTATTGGATTAGAGA

                            
       1128 TGTATTGGATTAGA-A
          1 TGTATTGGATTAGAGA

                            *
       1143 GTGTATTGGATTAGAGG
          1 -TGTATTGGATTAGAGA

                
       1160 TGTA
          1 TGTA

       1164 ATAGCAAATC


Statistics
Matches: 33,  Mismatches: 1, Indels: 4
        0.87            0.03        0.11

Matches are distributed among these distances:
  15    1  0.03
  16   32  0.97

ACGTcount: A:0.29, C:0.00, G:0.33, T:0.38


Consensus pattern (16 bp):   
TGTATTGGATTAGAGA
Done.