Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D04G008400.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2275
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30


Found at i:1540 original size:7 final size:8

Alignment explanation


    Indices: 1504--1538  Score: 70
    Period size: 8  Copynumber: 4.4  Consensus size: 8

       1494 CTCTTTCAAG

                    
       1504 TTTTGTTT
          1 TTTTGTTT

                    
       1512 TTTTGTTT
          1 TTTTGTTT

                    
       1520 TTTTGTTT
          1 TTTTGTTT

                    
       1528 TTTTGTTT
          1 TTTTGTTT

               
       1536 TTT
          1 TTT

       1539 GTAGAGGCTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   27  1.00

ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89


Consensus pattern (8 bp):   
TTTTGTTT
Done.