Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D04G178300.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2200
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Found at i:1657 original size:24 final size:24

Alignment explanation


    Indices: 1630--1679  Score: 91
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1620 CTTACTAATC

                                    
       1630 GAACAATTCCAAACTACAACCGAG
          1 GAACAATTCCAAACTACAACCGAG

                               *    
       1654 GAACAATTCCAAACTACAATCGAG
          1 GAACAATTCCAAACTACAACCGAG

              
       1678 GA
          1 GA

       1680 TACGGGTGGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.46, C:0.26, G:0.14, T:0.14


Consensus pattern (24 bp):   
GAACAATTCCAAACTACAACCGAG
Done.