Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D06G020500.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2743
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:425 original size:6 final size:6

Alignment explanation


    Indices: 384--422  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        374 AGGCCACGGT

                                            *     *      
        384 CACAGC CACAGC CACAGC CACAGC CACAAC CACGGC CAC
          1 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CAC

        423 GGCAACGGCC


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.33, C:0.51, G:0.15, T:0.00


Consensus pattern (6 bp):   
CACAGC
Done.