Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D06G102100.2.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1853
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24


Found at i:1719 original size:11 final size:11

Alignment explanation


    Indices: 1703--1728  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       1693 GGTAGTGAGT

                       
       1703 AGTGAGTAGTG
          1 AGTGAGTAGTG

                       
       1714 AGTGAGTAGTG
          1 AGTGAGTAGTG

                
       1725 AGTG
          1 AGTG

       1729 GACAGTGTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.27, C:0.00, G:0.46, T:0.27


Consensus pattern (11 bp):   
AGTGAGTAGTG

Found at i:1735 original size:18 final size:18

Alignment explanation


    Indices: 1696--1735  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1686 GAACAAGGGT

                            **
       1696 AGTGAGTAGTGAGTAGTG
          1 AGTGAGTAGTGAGTAGAC

                          *   
       1714 AGTGAGTAGTGAGTGGAC
          1 AGTGAGTAGTGAGTAGAC

                
       1732 AGTG
          1 AGTG

       1736 TAATAAAGTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.28, C:0.03, G:0.45, T:0.25


Consensus pattern (18 bp):   
AGTGAGTAGTGAGTAGAC
Done.