Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.D08G170600.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2496
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26


Found at i:99 original size:6 final size:6

Alignment explanation


    Indices: 84--120  Score: 67
    Period size: 6  Copynumber: 6.3  Consensus size: 6

         74 CAAGACCCCA

                                                        
         84 ACCA-C ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC AC
          1 ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC ACCAGC AC

        121 TATCCACCAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    4  0.13
   6   27  0.87

ACGTcount: A:0.35, C:0.51, G:0.14, T:0.00


Consensus pattern (6 bp):   
ACCAGC

Done.