Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A04G085400.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2600
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:38 original size:7 final size:7

Alignment explanation


    Indices: 26--62  Score: 74
    Period size: 7  Copynumber: 5.3  Consensus size: 7

         16 TAACCTCACC

                   
         26 CTCCTCT
          1 CTCCTCT

                   
         33 CTCCTCT
          1 CTCCTCT

                   
         40 CTCCTCT
          1 CTCCTCT

                   
         47 CTCCTCT
          1 CTCCTCT

                   
         54 CTCCTCT
          1 CTCCTCT

              
         61 CT
          1 CT

         63 TACCTTTCCC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   30  1.00

ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43


Consensus pattern (7 bp):   
CTCCTCT

Done.