Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gohir.A04G115000.1.v1.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874
Length: 1458
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Found at i:293 original size:33 final size:33
Alignment explanation
Indices: 244--324 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
234 GGAAATCCCG
* * *
244 AAACCTGAAATACCTAAAATGCCTGAGTTGCCA
1 AAACCTGAATTGCCTAAAATGCCGGAGTTGCCA
* *
277 AAACCTGAATTGCCTAAAGTTCCGGAGTTGCCA
1 AAACCTGAATTGCCTAAAATGCCGGAGTTGCCA
* *
310 AAGCCCGAATTGCCT
1 AAACCTGAATTGCCT
325 GAGGTTCCGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (33 bp):
AAACCTGAATTGCCTAAAATGCCGGAGTTGCCA
Found at i:332 original size:33 final size:33
Alignment explanation
Indices: 268--338 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
258 TAAAATGCCT
*
268 GAGTTGCCAAAACCTGAATTGCCTAAAGTTCCG
1 GAGTTGCCAAAACCCGAATTGCCTAAAGTTCCG
* * *
301 GAGTTGCCAAAGCCCGAATTGCCTGAGGTTCCG
1 GAGTTGCCAAAACCCGAATTGCCTAAAGTTCCG
*
334 AAGTT
1 GAGTT
339 TCTGAAAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (33 bp):
GAGTTGCCAAAACCCGAATTGCCTAAAGTTCCG
Found at i:359 original size:51 final size:51
Alignment explanation
Indices: 292--440 Score: 174
Period size: 51 Copynumber: 2.9 Consensus size: 51
282 TGAATTGCCT
* * * * ** *
292 AAAGTTCCGGAGTTGCCAAAGCCCGAATTGCCTGAGGTTCC-GAAGTTTCTG
1 AAAGTTCCAGAGTTGCCAAAACCAGAATTACCCAAGGTTCCTG-AGTTTCCG
*
343 AAAGTTCCAGAATTGCCAAAACCAGAATTACCCAAGGTTCCTGAGTTTCCG
1 AAAGTTCCAGAGTTGCCAAAACCAGAATTACCCAAGGTTCCTGAGTTTCCG
* * * *
394 AAAGTTCCAGAGTTGCCAAAACCTGAATTTCCTAAGATTCCTGAGTT
1 AAAGTTCCAGAGTTGCCAAAACCAGAATTACCCAAGGTTCCTGAGTT
441 GAAAAAACCT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 83 0.99
52 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (51 bp):
AAAGTTCCAGAGTTGCCAAAACCAGAATTACCCAAGGTTCCTGAGTTTCCG
Found at i:566 original size:33 final size:33
Alignment explanation
Indices: 526--860 Score: 275
Period size: 33 Copynumber: 10.2 Consensus size: 33
516 TCCGGAGTTA
* *
526 CCAAAGCCAGAATTTCCTAAAGTTCCTGAAGTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
* * * *
559 CCCAAGCCTGAATTACCCAAAGCTCCTG-AGTTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAG-TG
* * * * *
592 CCAAAACCTGAATTACCAAAAGTTCCTG-AGTTA
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAG-TG
* *
625 CCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
* * *
658 CCTAAGCCAGAATTGCCTAAAGTTCCTGAGGTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
* * *
691 CCTAAGCCGGAATTGCCCAAAGCTCCTGAAGTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
* * * * *
724 CCCAAGCCTGAATTACCCAAAGCTCCCG-AGTTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAG-TG
** ** * *
757 CCAAAGCTTGAATCACCAAAAGTTCCTG-AGTTA
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAG-TG
* *
790 CCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTG
1 CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
* * *
823 CCTAAG-CAGAAATTGCCCAAAGCTCCTGAATTG
1 CCAAAGCCAG-AATTGCCCAAAGTTCCTGAAGTG
856 CCAAA
1 CCAAA
861 AATTCCTGAG
Statistics
Matches: 252, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
32 7 0.03
33 243 0.96
34 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (33 bp):
CCAAAGCCAGAATTGCCCAAAGTTCCTGAAGTG
Found at i:603 original size:99 final size:99
Alignment explanation
Indices: 475--692 Score: 292
Period size: 99 Copynumber: 2.2 Consensus size: 99
465 TCCAGAGATG
* * * * *
475 CCCAATGCTCCTAAATTGTCAAAATCTGAAGCACCAAAAGTTCCGGAGTTACCAAAGCCAGAATT
1 CCCAAAGCTCCTGAGTTGCCAAAACCTGAAGCACCAAAAGTTCCGGAGTTACCAAAGCCAGAATT
* *
540 TCCTAAAGTTCCTGAAGTGCCCAAGCCTGAATTA
66 GCCTAAAGTTCCTGAAGTGCCCAAGCCAGAATTA
** *
574 CCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACCAAAAGTTCCTGAGTTACCAAAGCCAGAATT
1 CCCAAAGCTCCTGAGTTGCCAAAACCTGAAGCACCAAAAGTTCCGGAGTTACCAAAGCCAGAATT
* * *
639 GCCTAAAGTTCCTGAGGTGCCTAAGCCAGAATTG
66 GCCTAAAGTTCCTGAAGTGCCCAAGCCAGAATTA
* * *
673 CCTAAAGTTCCTGAGGTGCC
1 CCCAAAGCTCCTGAGTTGCC
693 TAAGCCGGAA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 103 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (99 bp):
CCCAAAGCTCCTGAGTTGCCAAAACCTGAAGCACCAAAAGTTCCGGAGTTACCAAAGCCAGAATT
GCCTAAAGTTCCTGAAGTGCCCAAGCCAGAATTA
Found at i:625 original size:18 final size:17
Alignment explanation
Indices: 565--629 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
555 AGTGCCCAAG
*
565 CCTGAATTACCCAAAGCT
1 CCTGAATTACCAAAAG-T
* *
583 CCTGAGTTGCCAAAA--
1 CCTGAATTACCAAAAGT
598 CCTGAATTACCAAAAGTT
1 CCTGAATTACCAAAAG-T
*
616 CCTGAGTTACCAAA
1 CCTGAATTACCAAA
630 GCCAGAATTG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 13 0.34
18 25 0.66
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (17 bp):
CCTGAATTACCAAAAGT
Found at i:661 original size:18 final size:18
Alignment explanation
Indices: 638--695 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
628 AAGCCAGAAT
638 TGCCTAAAGTTCCTGAGG
1 TGCCTAAAGTTCCTGAGG
* **
656 TGCCT-AAG--CCAGAAT
1 TGCCTAAAGTTCCTGAGG
671 TGCCTAAAGTTCCTGAGG
1 TGCCTAAAGTTCCTGAGG
689 TGCCTAA
1 TGCCTAA
696 GCCGGAATTG
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 9 0.29
16 3 0.10
17 3 0.10
18 16 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (18 bp):
TGCCTAAAGTTCCTGAGG
Found at i:704 original size:99 final size:99
Alignment explanation
Indices: 507--860 Score: 334
Period size: 99 Copynumber: 3.6 Consensus size: 99
497 AATCTGAAGC
* * * * * *
507 ACCAAAAGTTCCGGAGTTACCAAAGCCAGAATTTCCTAAAGTTCCTGAAGTGCCCAAGCCTGAAT
1 ACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCCAAAGCTCCTGAGGTGCCAAAGCCTGAAT
* * * *
572 TACCCAAAGCTCCTGAGTTGCCAAAACCTGAATT
66 TACCAAAAGTTCCTGAGTTGCCAAAGCCAGAATT
* * * *
606 ACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAAT
1 ACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCCAAAGCTCCTGAGGTGCCAAAGCCTGAAT
* * * * *
671 TGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAATT
66 TACCAAAAGTTCCTGAGTTGCCAAAGCCAGAATT
* * * * * * * * * *
705 GCCCAAAGCTCCTGAAG-TGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAGCTTGAA
1 ACCAAAAGTTCCTG-AGTTACCAAAGCCAGAATTGCCCAAAGCTCCTGAGGTGCCAAAGCCTGAA
* *
769 TCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATT
65 TTACCAAAAGTTCCTGAGTTGCCAAAGCCAGAATT
* * * * * **
804 GCCTAAAGTTCCTGAGGTGCCTAAG-CAGAAATTGCCCAAAGCTCCTGAATTGCCAAA
1 ACCAAAAGTTCCTGAGTTACCAAAGCCAG-AATTGCCCAAAGCTCCTGAGGTGCCAAA
861 AATTCCTGAG
Statistics
Matches: 212, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
98 4 0.02
99 206 0.97
100 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (99 bp):
ACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCCAAAGCTCCTGAGGTGCCAAAGCCTGAAT
TACCAAAAGTTCCTGAGTTGCCAAAGCCAGAATT
Found at i:727 original size:18 final size:18
Alignment explanation
Indices: 704--749 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 18
694 AAGCCGGAAT
704 TGCCCAAAGCTCCTGAAG
1 TGCCCAAAGCTCCTGAAG
*
722 TGCCC-AAG--CCTGAAT
1 TGCCCAAAGCTCCTGAAG
*
737 TACCCAAAGCTCC
1 TGCCCAAAGCTCC
750 CGAGTTGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
15 10 0.43
16 3 0.13
17 3 0.13
18 7 0.30
ACGTcount: A:0.28, C:0.37, G:0.17, T:0.17
Consensus pattern (18 bp):
TGCCCAAAGCTCCTGAAG
Found at i:755 original size:132 final size:132
Alignment explanation
Indices: 506--861 Score: 489
Period size: 132 Copynumber: 2.7 Consensus size: 132
496 AAATCTGAAG
* * * * *
506 CACCAAAAGTTCCGGAGTTACCAAAGCCAGAATTTCCTAAAGTTCCTGAAGTGCCCAAGCCTGAA
1 CACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAA
* * *
571 TTACCCAAAGCTCCTG-AGTTGCCAAAACCTGAATTACCAAAAGTTCCTGAGTTACCAAAGCCAG
66 TTGCCCAAAGCTCCTGAAG-TGCCAAAACCTGAATTACCAAAAGCTCCCGAGTTACCAAAGCCAG
635 AAT
130 AAT
** * * * *
638 TGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAA
1 CACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAA
* * * * **
703 TTGCCCAAAGCTCCTGAAGTGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTGCCAAAGCTTGA
66 TTGCCCAAAGCTCCTGAAGTGCCAAAACCTGAATTACCAAAAGCTCCCGAGTTACCAAAGCCAGA
768 AT
131 AT
* *
770 CACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCAGAAA
1 CACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAA
*
835 TTGCCCAAAGCTCCTGAATTGCCAAAA
66 TTGCCCAAAGCTCCTGAAGTGCCAAAA
862 ATTCCTGAGG
Statistics
Matches: 192, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
132 190 0.99
133 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (132 bp):
CACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCGGAA
TTGCCCAAAGCTCCTGAAGTGCCAAAACCTGAATTACCAAAAGCTCCCGAGTTACCAAAGCCAGA
AT
Found at i:867 original size:51 final size:51
Alignment explanation
Indices: 799--896 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
789 ACCAAAGCCA
* * * * *
799 GAATTGCCTAAAGTTCCTGAGGTGCC-TAAGCAGAAATTGCCCAAAGCTCCT
1 GAATTGCCAAAAATTCCTGAGGTACCAAAACCAG-AATTGCCCAAAGCTCCT
850 GAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGC
1 GAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGC
897 GACTGAGCTG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 36 0.88
52 5 0.12
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (51 bp):
GAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCTCCT
Found at i:887 original size:33 final size:33
Alignment explanation
Indices: 850--1100 Score: 191
Period size: 33 Copynumber: 7.6 Consensus size: 33
840 CAAAGCTCCT
*
850 GAATTGCCAAAAATTCCTGAGGTACCAAAACCA
1 GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
* *** * * *
883 GAATTGCCCAAAGCGACTGAGCTGCCAAAACCT
1 GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
* * * *
916 GAATTACCAAAAGTTCCTGAGGTGCCTAAGCCA
1 GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
* * ** *
949 GAATTGCCAAAAGCTCCTAAATTACCAAAACCT
1 GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
* * * * *
982 CAATTACCTAAAA-TTCCCGAGTTAACAAAACCA
1 GAATTGCC-AAAAGTTCCTGAGGTACCAAAACCA
* * *
1015 GAATTGCCTAAAGTTCCAGAGGTACCGAAACCA
1 GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
* * * *
1048 GAATTGCCCAAAA-CTCCTGAGTTGCCAAAACCT
1 GAATTG-CCAAAAGTTCCTGAGGTACCAAAACCA
* *
1081 GAATTACCTAAAGTTCCTGA
1 GAATTGCCAAAAGTTCCTGA
1101 ATTGCCTAGC
Statistics
Matches: 163, Mismatches: 51, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
32 8 0.05
33 146 0.90
34 9 0.06
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.20
Consensus pattern (33 bp):
GAATTGCCAAAAGTTCCTGAGGTACCAAAACCA
Found at i:890 original size:132 final size:128
Alignment explanation
Indices: 500--896 Score: 434
Period size: 132 Copynumber: 3.0 Consensus size: 128
490 TTGTCAAAAT
* * * * *
500 CTGAAGCACCAAAAGTTCCGGAGTTACCAAAGCCAGAATTTCCTAAAGTTCCTGAAGTGCCCAAG
1 CTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
* * * * *
565 CCTGAATTACCCAAAGCTCCTGAGTTGCCAAAACCTGAATTACCAAAAGTTCCTGAGTTACCAAA
66 -CAGAATTGCCCAAAGCTCCTGAATTGCCAAAACCTGAATTACCAAAA---CCAGAGTTGCCAAA
630 GC
127 GC
* ** * * * *
632 CAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
1 CTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
* * * * * *
697 CCGGAATTGCCCAAAGCTCCTGAAGTGCCCAAGCCTGAATTACCCAAAGCTCCCGAGTTGCCAAA
66 -CAGAATTGCCCAAAGCTCCTGAATTGCCAAAACCTGAATTA-CCAAA--ACCAGAGTTGCCAAA
762 GC
127 GC
*
764 TTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
1 CTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
** *
829 CAGAAATTGCCCAAAGCTCCTGAATTGCCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAA
66 CAG-AATTGCCCAAAGCTCCTGAATTGCC-AAAA--CCTGAATTACCAAAACCAGAGTTG-CCAA
894 AGC
126 AGC
897 GACTGAGCTG
Statistics
Matches: 219, Mismatches: 38, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
131 2 0.01
132 191 0.87
133 14 0.06
134 5 0.02
135 7 0.03
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (128 bp):
CTGAATCACCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAG
CAGAATTGCCCAAAGCTCCTGAATTGCCAAAACCTGAATTACCAAAACCAGAGTTGCCAAAGC
Found at i:934 original size:84 final size:84
Alignment explanation
Indices: 772--935 Score: 186
Period size: 84 Copynumber: 2.0 Consensus size: 84
762 GCTTGAATCA
* * * * *** * * *
772 CCAAAAGTTCCTGAGTTACCAAAGCCAGAATTGCCTAAAGTTCCTGAGGTGCCTAAGCAGAAATT
1 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACTGAGCTGCCAAACCAGAAATT
* *
837 GCCCAAAGCTCCTGAATTG
66 ACCAAAAGCTCCTGAATTG
*
856 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACTGAGCTGCCAAAACCTG-AAT
1 CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACTGAGCTGCC-AAACCAGAAAT
*
920 TACCAAAAGTTCCTGA
65 TACCAAAAGCTCCTGA
936 GGTGCCTAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
84 61 0.94
85 4 0.06
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (84 bp):
CCAAAAATTCCTGAGGTACCAAAACCAGAATTGCCCAAAGCGACTGAGCTGCCAAACCAGAAATT
ACCAAAAGCTCCTGAATTG
Found at i:1028 original size:99 final size:99
Alignment explanation
Indices: 908--1097 Score: 256
Period size: 99 Copynumber: 1.9 Consensus size: 99
898 ACTGAGCTGC
* * * * *
908 CAAAACCTGAATTACCAAAAGTTCCTGAGGTGCCTAAGCCAGAATTG-CCAAAAGCTCCTAAATT
1 CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAA-CTCCTAAATT
972 ACCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
65 ACCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
* * * * *
1007 CAAAACCAGAATTGCCTAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTGAGTTG
1 CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTAAATTA
* *
1072 CCAAAACCTGAATTACCTAAAGTTCC
66 CCAAAACCTCAATTACCTAAAATTCC
1098 TGAATTGCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 72 0.92
100 6 0.08
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (99 bp):
CAAAACCAGAATTACCAAAAGTTCCAGAGGTACCGAAACCAGAATTGCCCAAAACTCCTAAATTA
CCAAAACCTCAATTACCTAAAATTCCCGAGTTAA
Done.