Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10033373

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1844
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28


Found at i:270 original size:6 final size:6

Alignment explanation


    Indices: 259--284  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        249 TAACAAAAAT

                                          
        259 CCCATG CCCATG CCCATG CCCATG CC
          1 CCCATG CCCATG CCCATG CCCATG CC

        285 AATGGTTGCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.54, G:0.15, T:0.15


Consensus pattern (6 bp):   
CCCATG

Done.