Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10038495

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2199
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:2105 original size:2 final size:2

Alignment explanation


    Indices: 2098--2139  Score: 75
    Period size: 2  Copynumber: 21.0  Consensus size: 2

       2088 CTCTAAAACT

                                                                   *      
       2098 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

       2140 AAGTTGTTAT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50


Consensus pattern (2 bp):   
TC

Done.