Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10039850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2679
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28


Found at i:1308 original size:18 final size:18

Alignment explanation


    Indices: 1287--1329  Score: 50
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       1277 TCCGGTGAGA

                              
       1287 ATGATGAGGAGTTATCAG
          1 ATGATGAGGAGTTATCAG

                  **     *  * 
       1305 ATGATGCTGAGTTTTCGG
          1 ATGATGAGGAGTTATCAG

                   
       1323 ATGATGA
          1 ATGATGA

       1330 AAAGGAGGCT


Statistics
Matches: 20,  Mismatches: 5, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33


Consensus pattern (18 bp):   
ATGATGAGGAGTTATCAG
Done.