Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10036922

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1806
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:738 original size:3 final size:3

Alignment explanation


    Indices: 724--755  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        714 CTACTGCTTA

                  *                                   
        724 TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

        756 ATCATCATGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (3 bp):   
TCC

Done.