Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10036832

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1983
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29


Found at i:527 original size:15 final size:15

Alignment explanation


    Indices: 508--539  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        498 TAGTGTTTTA

                            
        508 AAAAATAAATAAAAAT
          1 AAAAA-AAATAAAAAT

                           
        524 AAAAAAAATAAAAAT
          1 AAAAAAAATAAAAAT

             
        539 A
          1 A

        540 GCCCCAAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   11  0.69
  16    5  0.31

ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16


Consensus pattern (15 bp):   
AAAAAAAATAAAAAT

Found at i:530 original size:9 final size:9

Alignment explanation


    Indices: 507--537  Score: 53
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        497 ATAGTGTTTT

                     
        507 AAAAAATAA
          1 AAAAAATAA

                      
        516 ATAAAAATAA
          1 A-AAAAATAA

                     
        526 AAAAAATAA
          1 AAAAAATAA

               
        535 AAA
          1 AAA

        538 TAGCCCCAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   9   12  0.57
  10    9  0.43

ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13


Consensus pattern (9 bp):   
AAAAAATAA
Done.