Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10023302

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2013
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28


Found at i:1621 original size:27 final size:27

Alignment explanation


    Indices: 1582--1636  Score: 67
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1572 CTCTGAGAAG

                    *      *            
       1582 TCAACACTGAACCCCCATGCAAAGGAGT
          1 TCAACACTCAACCCCAATGCAAA-GAGT

                          *            
       1610 TCAA-ACTCAACCCTAATGCAAAGAGT
          1 TCAACACTCAACCCCAATGCAAAGAGT

             
       1636 T
          1 T

       1637 TCACACCATC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  26    5  0.21
  27   15  0.62
  28    4  0.17

ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18


Consensus pattern (27 bp):   
TCAACACTCAACCCCAATGCAAAGAGT
Done.