Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10002911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16


Found at i:515 original size:27 final size:24

Alignment explanation


    Indices: 456--511  Score: 85
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        446 ATGCCGAACC

                                 *  
        456 GGAAGAACCAAAACCACCACCGGA
          1 GGAAGAACCAAAACCACCACCAGA

                      *  *          
        480 GGAAGAACCACAATCACCACCAGA
          1 GGAAGAACCAAAACCACCACCAGA

                    
        504 GGAAGAAC
          1 GGAAGAAC

        512 AACCGCCGCC


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.46, C:0.30, G:0.21, T:0.02


Consensus pattern (24 bp):   
GGAAGAACCAAAACCACCACCAGA
Done.