Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_D_gene_10005778

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:536 original size:36 final size:37

Alignment explanation


    Indices: 470--549  Score: 94
    Period size: 36  Copynumber: 2.2  Consensus size: 37

        460 TCTCCACCTT

                                 *                
        470 CCCCT-CCCACAACCCAATCCTCCGCCCCTTCACCC-G
          1 CCCCTCCCCACAACCCAATCCCCCGCCCCTTC-CCCTG

                            **        *          
        506 -CCCTCCCCACAACCCCTTCCCCCGCTCCTTCCCCTG
          1 CCCCTCCCCACAACCCAATCCCCCGCCCCTTCCCCTG

                    
        542 CCCCTCCC
          1 CCCCTCCC

        550 AAAACACCCG


Statistics
Matches: 37,  Mismatches: 4, Indels: 5
        0.80            0.09        0.11

Matches are distributed among these distances:
  35    7  0.19
  36   23  0.62
  37    7  0.19

ACGTcount: A:0.11, C:0.68, G:0.05, T:0.16


Consensus pattern (37 bp):   
CCCCTCCCCACAACCCAATCCCCCGCCCCTTCCCCTG
Done.