Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G249100.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3908
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:3811 original size:11 final size:12

Alignment explanation


    Indices: 3795--3823  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       3785 ATGTTAATGG

                        
       3795 TGAATG-ATATT
          1 TGAATGAATATT

                        
       3806 TGAATGAATATT
          1 TGAATGAATATT

                  
       3818 TGAATG
          1 TGAATG

       3824 TTCTTATTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  11    6  0.35
  12   11  0.65

ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41


Consensus pattern (12 bp):   
TGAATGAATATT
Done.