Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G254500.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 389

Length: 649
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31


Found at i:383 original size:168 final size:168

Alignment explanation


    Indices: 145--475  Score: 536
    Period size: 168  Copynumber: 2.0  Consensus size: 168

        135 CCCTCGCAGA

                             *              *           *           *  *     
        145 TTGTTTTTGGGTCATTTTCTGACATGCCAGCTGACGTATTCTATGATTCAACATTCGACGAAGCA
          1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA

                                           *             *                   
        210 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCGTCCACCGGCACCTTCAGCACCGGCAGGGGCTTC
         66 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC

                                                  
        275 TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGC
        131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGC

                         *    *       *   *                                  
        313 TTGTTTTTGGGTCCTTTGGTGACATGTCAGGTCACGTATTCTATCATTCAACATTCAACCAAGCA
          1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA

                                                 **                         *
        378 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACTTGCACCTCCAGCACCGGCAGGGGCTTT
         66 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC

                                             
        443 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA
        131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAA

        476 AAATGCTAAA


Statistics
Matches: 149,  Mismatches: 14, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 168  149  1.00

ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25


Consensus pattern (168 bp):   
TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC
TGAAAATGTGGCCAAAGATGATGAGAAACCAAACAAGC
Done.