Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.004G016100.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2390
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:659 original size:75 final size:75

Alignment explanation


    Indices: 443--674  Score: 313
    Period size: 75  Copynumber: 3.1  Consensus size: 75

        433 CCATTACTGA

                *        *    *                  *                           
        443 AACCGATGATTCCATTGTTAAAACCGGTGAGGATTCTATTTCTTCGCCGGCTCCGGCAATTCCCC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCTGTTTCTTCGCCGGCTCCGGCAATTCCCC

               **     
        508 CTGCATTAGC
         66 CTGTTTTAGC

                                                                             
        518 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCTGTTTCTTCGCCGGCTCCGGCAATTCCCC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCTGTTTCTTCGCCGGCTCCGGCAATTCCCC

                      
        583 CTGTTTTAGC
         66 CTGTTTTAGC

                        *            *  *       *          *      *  *       
        593 AACCAATGATTCTGTTGTAAAAACCAGTAAGGATTCGGTTTCTTCGCTGGCTCCAGCTATGT-CC
          1 AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCTGTTTCTTCGCCGGCTCCGGCAAT-TCCC

                  *    
        657 CCTGTTGTAGC
         65 CCTGTTTTAGC

             *     
        668 ACCCAAT
          1 AACCAAT

        675 CCGGTTACTA


Statistics
Matches: 141,  Mismatches: 15, Indels: 2
        0.89            0.09        0.01

Matches are distributed among these distances:
  75  140  0.99
  76    1  0.01

ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30


Consensus pattern (75 bp):   
AACCAATGATTCCGTTGTAAAAACCGGTGAGGATTCTGTTTCTTCGCCGGCTCCGGCAATTCCCC
CTGTTTTAGC
Done.