Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.004G086900.12-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5183
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27


Found at i:3444 original size:21 final size:21

Alignment explanation


    Indices: 3418--3459  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3408 ATCGAAGGTT

                  *              
       3418 TCTGGTTCACATAAATCAAAA
          1 TCTGGTACACATAAATCAAAA

                                 
       3439 TCTGGTACACATAAATCAAAA
          1 TCTGGTACACATAAATCAAAA

       3460 CATTGCTTCA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26


Consensus pattern (21 bp):   
TCTGGTACACATAAATCAAAA
Done.