Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.005G010300.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 965

Length: 1609
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:1027 original size:33 final size:34

Alignment explanation


    Indices: 985--1049  Score: 89
    Period size: 33  Copynumber: 1.9  Consensus size: 34

        975 TGATTTCGAA

                          *                    
        985 GATGATGAAACT-ACTGCAACTCGACTT-TTCAGC
          1 GATGATGAAA-TAAATGCAACTCGACTTATTCAGC

                                   *        
       1018 GATGATGAAATAAATGCAACTCGTCTTATTCA
          1 GATGATGAAATAAATGCAACTCGACTTATTCA

       1050 AGGAATTTGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  32    1  0.04
  33   23  0.82
  34    4  0.14

ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29


Consensus pattern (34 bp):   
GATGATGAAATAAATGCAACTCGACTTATTCAGC
Done.