Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.005G123100.3-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1842
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30


Found at i:1605 original size:4 final size:4

Alignment explanation


    Indices: 1590--1643  Score: 81
    Period size: 4  Copynumber: 13.5  Consensus size: 4

       1580 ACATACGTAC

                    *                *                           *     
       1590 GTAT GTAG GTAT GTAT GTAT TTAT GTAT GTAT GTAT GTAT GTAC GTAT
          1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT

                   
       1638 GTAT GT
          1 GTAT GT

       1644 TCCAATCCCA


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   4   44  1.00

ACGTcount: A:0.24, C:0.02, G:0.26, T:0.48


Consensus pattern (4 bp):   
GTAT

Done.