Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.006G177800.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3270
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:2689 original size:6 final size:6

Alignment explanation


    Indices: 2680--2710  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       2670 GTGGTGATGT

                                                
       2680 GAGCGG GAGCGG GAGCGG GAGCGG GAGCGG G
          1 GAGCGG GAGCGG GAGCGG GAGCGG GAGCGG G

       2711 GGCAAAGCAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.16, C:0.16, G:0.68, T:0.00


Consensus pattern (6 bp):   
GAGCGG

Done.