Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.006G219600.3-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30


Found at i:1194 original size:31 final size:31

Alignment explanation


    Indices: 1159--1223  Score: 130
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1149 TGAGTACTTC

                                           
       1159 TCTACAAGTTGAAATGGATGTTCCTATATTG
          1 TCTACAAGTTGAAATGGATGTTCCTATATTG

                                           
       1190 TCTACAAGTTGAAATGGATGTTCCTATATTG
          1 TCTACAAGTTGAAATGGATGTTCCTATATTG

               
       1221 TCT
          1 TCT

       1224 TG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40


Consensus pattern (31 bp):   
TCTACAAGTTGAAATGGATGTTCCTATATTG
Done.