Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.006G238100.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:110 original size:25 final size:25

Alignment explanation


    Indices: 64--112  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         54 AATCCATTGA

                      * *            
         64 AAATCTCAATTCGATTCGAAACCCT
          1 AAATCTCAATCCCATTCGAAACCCT

                                     
         89 AAATCTCAATCCCATTTC-AAACCC
          1 AAATCTCAATCCCA-TTCGAAACCC

        113 CAGACATCAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  25   18  0.86
  26    3  0.14

ACGTcount: A:0.37, C:0.33, G:0.04, T:0.27


Consensus pattern (25 bp):   
AAATCTCAATCCCATTCGAAACCCT
Done.