Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.007G047600.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2203
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:1909 original size:44 final size:44

Alignment explanation


    Indices: 1851--1940  Score: 153
    Period size: 45  Copynumber: 2.0  Consensus size: 44

       1841 TTTATTTATT

                               *               *         
       1851 ATATGTATATTTTTTTTCTTTGTACAATGTAACATTTTAAGAGAG
          1 ATATGTATATTTTTTTTCTATGTACAATGTAACA-CTTAAGAGAG

                                                        
       1896 ATATGTATATTTTTTTTCTATGTACAATGTAACACTTAAGAGAG
          1 ATATGTATATTTTTTTTCTATGTACAATGTAACACTTAAGAGAG

             
       1940 A
          1 A

       1941 GATTCTATTT


Statistics
Matches: 43,  Mismatches: 2, Indels: 1
        0.93            0.04        0.02

Matches are distributed among these distances:
  44   10  0.23
  45   33  0.77

ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46


Consensus pattern (44 bp):   
ATATGTATATTTTTTTTCTATGTACAATGTAACACTTAAGAGAG
Done.