Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.007G094100.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3637
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:510 original size:45 final size:42

Alignment explanation


    Indices: 424--508  Score: 136
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        414 AATTAATCCG

                    *              *                  
        424 CAATCATCCTCTACTTATCAACAGCCTGCACAATATCCTCCT
          1 CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT

                                                       
        466 CAATCATCATCCT-CTTATCAACAACCTGCACAATATCCTCCT
          1 CAATCATCAT-CTACTTATCAACAACCTGCACAATATCCTCCT

             
        508 C
          1 C

        509 CTGAAAGTAA


Statistics
Matches: 40,  Mismatches: 2, Indels: 2
        0.91            0.05        0.05

Matches are distributed among these distances:
  42   38  0.95
  43    2  0.05

ACGTcount: A:0.29, C:0.39, G:0.04, T:0.28


Consensus pattern (42 bp):   
CAATCATCATCTACTTATCAACAACCTGCACAATATCCTCCT
Done.