Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.001G017000.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4460
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27


Found at i:2283 original size:24 final size:24

Alignment explanation


    Indices: 2228--2286  Score: 64
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       2218 AAAGACAGTC

                 *          *       
       2228 ACAGCTGCAGCCACAGTCACATCT
          1 ACAGCAGCAGCCACAGCCACATCT

            *  *        *       *   
       2252 TCAACAGCAGCCTCAGCCACCTCT
          1 ACAGCAGCAGCCACAGCCACATCT

                       
       2276 ACAGCAGCAGC
          1 ACAGCAGCAGC

       2287 AGCAGCAGCA


Statistics
Matches: 27,  Mismatches: 8, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.29, C:0.41, G:0.17, T:0.14


Consensus pattern (24 bp):   
ACAGCAGCAGCCACAGCCACATCT
Done.