Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.007G183100.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2446
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:2361 original size:15 final size:15

Alignment explanation


    Indices: 2341--2370  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2331 GTCAAAAATT

                           
       2341 TTATACATAAATATG
          1 TTATACATAAATATG

                     *     
       2356 TTATACATATATATG
          1 TTATACATAAATATG

       2371 ATGGCATGCT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43


Consensus pattern (15 bp):   
TTATACATAAATATG
Done.