Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.007G217700.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1780
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:1204 original size:15 final size:15

Alignment explanation


    Indices: 1184--1214  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1174 TTCAGCAGAT

                           
       1184 AATTTGCATAGCATC
          1 AATTTGCATAGCATC

                           
       1199 AATTTGCATAGCATC
          1 AATTTGCATAGCATC

             
       1214 A
          1 A

       1215 TTCATGGGGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32


Consensus pattern (15 bp):   
AATTTGCATAGCATC
Done.