Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.008G159600.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30


Found at i:321 original size:6 final size:6

Alignment explanation


    Indices: 310--340  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        300 TTCCAAATTC

                                                
        310 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT C
          1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT C

        341 TCTGTTTTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (6 bp):   
CCCTTT

Done.