Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.009G137300.3-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1968
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:603 original size:6 final size:6

Alignment explanation


    Indices: 592--617  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        582 GTGCCTCTCT

                                          
        592 TGCACA TGCACA TGCACA TGCACA TG
          1 TGCACA TGCACA TGCACA TGCACA TG

        618 GTTAATGCAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19


Consensus pattern (6 bp):   
TGCACA

Done.