Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.009G408900.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:1284 original size:43 final size:43

Alignment explanation


    Indices: 1227--1313  Score: 111
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1217 GAGTTCATTG

                    *          * *   *                 
       1227 CAAGATTTTCTTGATTAAGTAGATGTATTATATCTTTTATTAC
          1 CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC

                *                        *   *         
       1270 CAAGGTTTACTTGATTAAGAAAATGCATTGTATTTTTTATTAC
          1 CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC

             
       1313 C
          1 C

       1314 TTGCAATATG


Statistics
Matches: 37,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  43   37  1.00

ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46


Consensus pattern (43 bp):   
CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC
Done.