Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.010G020400.6-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2204
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28


Found at i:1935 original size:13 final size:14

Alignment explanation


    Indices: 1912--1948  Score: 58
    Period size: 13  Copynumber: 2.7  Consensus size: 14

       1902 TGCATGTATG

                          
       1912 TATGCATGTATATA
          1 TATGCATGTATATA

                         *
       1926 TATG-ATGTATATG
          1 TATGCATGTATATA

                      
       1939 TATGCATGTA
          1 TATGCATGTA

       1949 ATCAACCTTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13   12  0.57
  14    9  0.43

ACGTcount: A:0.32, C:0.05, G:0.19, T:0.43


Consensus pattern (14 bp):   
TATGCATGTATATA
Done.