Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G063400.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29


Found at i:1125 original size:24 final size:24

Alignment explanation


    Indices: 1093--1172  Score: 106
    Period size: 24  Copynumber: 3.3  Consensus size: 24

       1083 GTATGGTGGG

                      *             
       1093 TATGGTGGACAAGGTTCAACTGGC
          1 TATGGTGGACCAGGTTCAACTGGC

                          *   *     
       1117 TATGGTGGACCAGGATCAGCTGGC
          1 TATGGTGGACCAGGTTCAACTGGC

                 *                **
       1141 TATGGCGGACCAGGTTCAACTGTT
          1 TATGGTGGACCAGGTTCAACTGGC

                    
       1165 TATGGTGG
          1 TATGGTGG

       1173 GTTGACTGGT


Statistics
Matches: 47,  Mismatches: 9, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  24   47  1.00

ACGTcount: A:0.21, C:0.17, G:0.35, T:0.26


Consensus pattern (24 bp):   
TATGGTGGACCAGGTTCAACTGGC
Done.