Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G066200.2-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2443
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25


Found at i:951 original size:3 final size:3

Alignment explanation


    Indices: 945--978  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        935 TGGTGGGGAA

                                                *        
        945 GAT GAT GAT GAT GAT GAT GAT GAT GAT TAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

        979 GTGAGAGAAG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35


Consensus pattern (3 bp):   
GAT

Done.