Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G121000.1-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32


Found at i:765 original size:45 final size:45

Alignment explanation


    Indices: 690--807  Score: 197
    Period size: 45  Copynumber: 2.7  Consensus size: 45

        680 TTTTTGTCCT

                                                       *  
        690 GATGTGGTTGCTT-C-CACGTTGCTTCCTTTTTTG-TCTGGACGTA
          1 GATGTGGTTGCTTCCACACGTTGCTTCCTTTTTTGCT-TGGACATA

                                                         
        733 GATGTGGTTGCTTCCACACGTTGCTTCCTTTTTTGCTTGGACATA
          1 GATGTGGTTGCTTCCACACGTTGCTTCCTTTTTTGCTTGGACATA

                                          
        778 GATGTGGTTGCTTCCACACGTTGCTTCCTT
          1 GATGTGGTTGCTTCCACACGTTGCTTCCTT


Statistics
Matches: 71,  Mismatches: 1, Indels: 4
        0.93            0.01        0.05

Matches are distributed among these distances:
  43   13  0.18
  44    1  0.01
  45   56  0.79
  46    1  0.01

ACGTcount: A:0.11, C:0.23, G:0.24, T:0.42


Consensus pattern (45 bp):   
GATGTGGTTGCTTCCACACGTTGCTTCCTTTTTTGCTTGGACATA
Done.