Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gorai.002G181700.2-JGI_221_v2.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1781
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31


Found at i:915 original size:6 final size:6

Alignment explanation


    Indices: 904--934  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        894 AGACGGAGAA

                                                
        904 AACCTC AACCTC AACCTC AACCTC AACCTC A
          1 AACCTC AACCTC AACCTC AACCTC AACCTC A

        935 TTCTCTATCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.35, C:0.48, G:0.00, T:0.16


Consensus pattern (6 bp):   
AACCTC

Done.