Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021426788.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1724
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:771 original size:11 final size:11

Alignment explanation


    Indices: 755--792  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        745 AAGCAAGGAG

                       
        755 GAGGAGGAGAA
          1 GAGGAGGAGAA

                       
        766 GAGGAGGA-AA
          1 GAGGAGGAGAA

             *         
        776 GGGGAGGAGAA
          1 GAGGAGGAGAA

             *    
        787 GGGGAG
          1 GAGGAG

        793 AAGAGTAATG


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  10    9  0.36
  11   16  0.64

ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00


Consensus pattern (11 bp):   
GAGGAGGAGAA
Done.