Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021429333.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31


Found at i:94 original size:22 final size:22

Alignment explanation


    Indices: 69--115  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

         59 CTCTATAACT

                                  
         69 AAAAATTAAGAAAATAAAAGAC
          1 AAAAATTAAGAAAATAAAAGAC

                                  
         91 AAAAATTAAGAAAATAAAAGAC
          1 AAAAATTAAGAAAATAAAAGAC

               
        113 AAA
          1 AAA

        116 GATTGCTACA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.74, C:0.04, G:0.09, T:0.13


Consensus pattern (22 bp):   
AAAAATTAAGAAAATAAAAGAC
Done.