Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021431366.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3280
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:2937 original size:54 final size:54

Alignment explanation


    Indices: 2879--3008  Score: 140
    Period size: 54  Copynumber: 2.4  Consensus size: 54

       2869 GAATCAAAAC

                           *                                        
       2879 AAGAAGAAACAAAGGTAGAGGCCCAA-AAGGAAGAA-CCAGAGGCAGAACCAAAGA
          1 AAGAAGAAACAAAGGCAGAGG-CCAAGAAGGAAGAACCCA-AGGCAGAACCAAAGA

                                   *   *               *   *       
       2933 AAGAAG-AACAAAAGGCAGAGGCTAAGGAGGAAGAACCCAAGGTAGAGCCAAAGA
          1 AAGAAGAAAC-AAAGGCAGAGGCCAAGAAGGAAGAACCCAAGGCAGAACCAAAGA

                    *    **       
       2987 AAGAAGAACCAAAAACAGAGGC
          1 AAGAAGAAACAAAGGCAGAGGC

       3009 ACCAGCTGCC


Statistics
Matches: 64,  Mismatches: 8, Indels: 8
        0.80            0.10        0.10

Matches are distributed among these distances:
  53    6  0.09
  54   53  0.83
  55    5  0.08

ACGTcount: A:0.53, C:0.16, G:0.28, T:0.02


Consensus pattern (54 bp):   
AAGAAGAAACAAAGGCAGAGGCCAAGAAGGAAGAACCCAAGGCAGAACCAAAGA

Found at i:2938 original size:27 final size:26

Alignment explanation


    Indices: 2908--2998  Score: 92
    Period size: 27  Copynumber: 3.4  Consensus size: 26

       2898 GGCCCAAAAG

                             *         
       2908 GAAGAACCAGAGGCAGAACCAAAGAAA
          1 GAAGAACCA-AGGCAGAGCCAAAGAAA

                    *         * *   * *
       2935 GAAGAACAAAAGGCAGAGGCTAAGGAG
          1 GAAGAAC-CAAGGCAGAGCCAAAGAAA

                         *             
       2962 GAAGAACCCAAGGTAGAGCCAAAGAAA
          1 GAAGAA-CCAAGGCAGAGCCAAAGAAA

                      
       2989 GAAGAACCAA
          1 GAAGAACCAA

       2999 AAACAGAGGC


Statistics
Matches: 50,  Mismatches: 12, Indels: 5
        0.75            0.18        0.07

Matches are distributed among these distances:
  26    4  0.08
  27   44  0.88
  28    2  0.04

ACGTcount: A:0.53, C:0.16, G:0.29, T:0.02


Consensus pattern (26 bp):   
GAAGAACCAAGGCAGAGCCAAAGAAA

Done.