Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021433268.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5205
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30


Found at i:3622 original size:234 final size:234

Alignment explanation


    Indices: 3203--3666  Score: 775
    Period size: 234  Copynumber: 2.0  Consensus size: 234

       3193 CATTTTAAGG

                                         *                                   
       3203 TTGGTAGTCCCAGTGATCAACCAAAAGATTATGCCCTTATATCAGATTCTCGACACCACCAAAGT
          1 TTGGTAGTCCCAGTGATCAACCAAAAGATCATGCCCTTATATCAGATTCTCGACACCACCAAAGT

                            *   *                            *           *   
       3268 CCTGTTAGACTGCCGATCACTGATTTTGTAGCAGAGCCTTCTGAAGTTCGCCAAGCCCAATGTAA
         66 CCTGTTAGACTGCCGACCACCGATTTTGTAGCAGAGCCTTCTGAAGTTCCCCAAGCCCAATATAA

                                           *             *                   
       3333 TGAAATGGTTACAGGCAATGAACTTGTGAAAGCTACCAATGCTACTCAGCCCAATGAAGAAAGTG
        131 TGAAATGGTTACAGGCAATGAACTTGTGAAAACTACCAATGCTACCCAGCCCAATGAAGAAAGTG

                                                   
       3398 ATGAAACAGATGCAGTGACCTTAGAAAGAGCAACTGTTT
        196 ATGAAACAGATGCAGTGACCTTAGAAAGAGCAACTGTTT

                                  *                                     *    
       3437 TTGGTAGTCCCAGTGATCAACCGAAAGATCATGCCCTTATATCAGATTCTCGACACCACCGAAGT
          1 TTGGTAGTCCCAGTGATCAACCAAAAGATCATGCCCTTATATCAGATTCTCGACACCACCAAAGT

                         * *                                                 
       3502 CCTGTTAGACTGCTGGCCACCGATTTTGTAGCAGAGCCTTCTGAAGTTCCCCAAGCCCAATATAA
         66 CCTGTTAGACTGCCGACCACCGATTTTGTAGCAGAGCCTTCTGAAGTTCCCCAAGCCCAATATAA

              **                 *                     *    *                
       3567 TGCGATGGTTACAGGCAATGACCTTGTGAAAACTACCAATGCTGCCCATCCCAATGAAGAAAGTG
        131 TGAAATGGTTACAGGCAATGAACTTGTGAAAACTACCAATGCTACCCAGCCCAATGAAGAAAGTG

                             *                 
       3632 ATGAAACAGATGCAGTGTCCTTAGAAAGAGCAACT
        196 ATGAAACAGATGCAGTGACCTTAGAAAGAGCAACT

       3667 CTTTCAAGTA


Statistics
Matches: 213,  Mismatches: 17, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 234  213  1.00

ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24


Consensus pattern (234 bp):   
TTGGTAGTCCCAGTGATCAACCAAAAGATCATGCCCTTATATCAGATTCTCGACACCACCAAAGT
CCTGTTAGACTGCCGACCACCGATTTTGTAGCAGAGCCTTCTGAAGTTCCCCAAGCCCAATATAA
TGAAATGGTTACAGGCAATGAACTTGTGAAAACTACCAATGCTACCCAGCCCAATGAAGAAAGTG
ATGAAACAGATGCAGTGACCTTAGAAAGAGCAACTGTTT
Done.