Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XR_002445560.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:1187 original size:3 final size:3

Alignment explanation


    Indices: 1173--1205  Score: 57
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       1163 ATTTGCAGTT

                                                       
       1173 GAA GATA GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GA-A GAA GAA GAA GAA GAA GAA GAA GAA GA

       1206 GGGAGAGATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   3   26  0.90
   4    3  0.10

ACGTcount: A:0.64, C:0.00, G:0.33, T:0.03


Consensus pattern (3 bp):   
GAA

Done.